Livia Tran's Projects
BIGDAWG Integrated GFE Customization and Amino Acid Testing (BIGCAAT) - software for standardizing and analyzing HLA disease-associated motifs at a gene feature and amino acid level
The COVID-19 Binding Repertore Assessment (COBRA) tool is a R pipeline that predicts HLA peptide binding affinity to SARS-CoV2 proteins, and quantifies the number of binders based on strength for a given HLA genotype in a BIGDAWG formatted dataset.
covid19 exploration
The HLA Imputation Portal (HIP) consumes SNP-genotyped subjects and imputes HLA Class I and Class II genotypes for each subject. This project is associated with the Mack Lab, and supported by National Institute of Allergy and Infectious Disease Grant R01 AI128775-07S1.
Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
The Omixon Genotyping Portal (OGP) consumes WGS or WES sequence subjects and imputes Class I and Class II HLA genotypes.This project is associated with the Mack Lab, and supported by National Institute of Allergy and Infectious Disease Grant R01 AI128775-07S1.
Searching Shared HLA Amino Acid Residue Prevalence