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awesome-bio-datasets

awesome-bio-datasets

bio-workflow

software and workflow

calib

Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.

cfdnapattern

Pattern Recognition for Cell-free DNA

ctdna-pipeline

A simplified pipeline for ctDNA sequencing data analysis

dedup

Deduplication for cfDNA sequencing data

facets

Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

firstgit

genefuse

Gene fusion detection and visualization

impact-pipeline

Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay

msk-grail-techval

High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants

mutscan

Detect and visualize target mutations by scanning FastQ files directly

qstock

qstock由“Python金融量化”公众号开发，试图打造成个人量化投研分析包，目前包括数据获取（data）、可视化(plot)、选股(stock)和量化回测（策略backtest）模块。 qstock将为用户提供简洁的数据接口和规整化后的金融市场数据。可视化模块为用户提供基于web的交互图形的简单接口； 选股模块提供了同花顺的选股数据和自定义选股，包括RPS、MM趋势、财务指标、资金流模型等； 回测模块为大家提供向量化（基于pandas）和基于事件驱动的基本框架和模型。 关注“Python金融量化“微信公众号，获取更多应用信息。

shiny

Easy interactive web applications with R

synthetic-seq-data

We aim to make it easier for biomedical researchers to access and customize synthetic sequence data for the purpose of sharing and testing analysis methods as well as training and collaboration

visualmsi

Detect and visualize microsatellite instability(MSI) from NGS data