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dada2

Accurate sample inference from amplicon data with single nucleotide resolution

deseq2

Differential gene expression analysis based on the negative binomial distribution

dncimper

R Package for PerSIMPER and DNCI analysis. Assembly process identification.

doing-meta-analysis-in-r

All R codes for the guide "Doing Meta-Analysis in R"

drawio-desktop

Official electron build of diagrams.net

feast

Fast expectation maximization for microbial source tracking

file2meco

Tranform files to the microtable object in microeco package

fungaltraits

A dynamic database of fungal trait measurements

funguild

FUNGuild: parsing OTUs into functional guilds

funguildr

Look Up Guild Information for Fungi in R

ggcor

only for researchers in china, authorized by houyunhuang

ggpicrust2

Make Picrust2 Output Analysis and Visualization Easier

ggprism

ggplot2 extension inspired by GraphPad Prism

ggraph

Grammar of Graph Graphics

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

ggtreeextra

:lemon: Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”

ggvegan

ggplot-based plots for vegan

icamp1

Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)

koodo-reader

A modern ebook manager and reader with sync and backup capacities for Windows, macOS, Linux and Web

media-downloader

Media Downloader is a Qt/C++ front end to youtube-dl

meta-apo

Meta-Apo (Metagenomic Apochromat) calibrates the predicted gene profiles from 16S-amplicon sequences using an optimized machine-learning based algorithm and a small number of paired WGS-amplicon samples as model training, thus produces diversity patterns that are much more consistent between amplicon- and WGS-based strategies.

metadat

Meta-analytic datasets for R

miceco

Various functions for analysis of microbial community data

microeco

An R package for data analysis in microbial community ecology

mooc_answer

学无止答题器，慕课答题器，**大学自动答题软件

mooc_downloader

学无止下载器，慕课下载器，Mooc网课下载，慕课网，**大学，网易云课堂，超星学习通，学银在线，学堂在线，爱课程，B站下载；支持视频，课件同时下载

my_wgcna

netcomi

Network Comparison for Microbial Compositional Data

netet

Miscellaneous functions of Network analysis and visulization

nst

Normalized Stochasticity Ratio in community assembly