Comments (2)
LiQian-XC
commented on July 23, 2024
@wu-yc did you use the corrected counts as the input for scTour? I suggest to use the raw UMI count matrix from Cellranger as the input. Do you mind pasting your code here? It will be easier for me to check from there. Thanks!
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wu-yc
commented on July 23, 2024
Thanks for your kind support. Now i used the pre-computed UMAP (from Seurat) and then calculate the ptime. It finally works beautifully.
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Related Issues (10)
- Availability of demo dataset HOT 3
- `.X`. error using sct.train.Trainer() HOT 8
- About the possibility of utilizing sctour on other modal data (i.e. scATAC-seq) HOT 2
- Reusing trained models HOT 2
- The jupyter kernel is dead. HOT 1
- More demonstrations? HOT 7
- calculating expression dynamics genes in Fig6E HOT 7
- Depends on scikit-misc? HOT 1
- tnode.train() Error HOT 2
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