linnarsson-lab Goto Github PK

adolescent-mouse

Analysis pipeline for the adolescent mouse nervous system project

adult-human-brain

Cytograph version used for adult human-brain analysis

auto-annotation-ah

Auto-annotations for analysis of the adult human brain

auto-annotation-md

Auto-annotations from Mouse brain development

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

backspin

Biclustering algorithm

backspinv2_matlab_public

bonefight

brainmap

Allen Brain Atlas utilities, parsers and data structures

ceftools

DEPRECATED Tools for manipulating cell expression format (CEF) files

chromograph

Camiel's scATAC-seq analysis pipeline

ciss-ws

linnarsson lab C# code tree

cmdstan-py

A wrapper of cmdstan in python

colormetric-plate-scanner

Code to find the test result of a color-metric LAMP assay on a flat-bed scanner.

cytograph

Algorithms for single-cell analysis

cytograph-dev

Algorithms for analysis of very large single-cell RNA-seq datasets

cytograph-shoji

cytograph2

developing-human-brain

dg_paper_public

Matlab code

dh_paper_public_code

Scripts used for single-cell RNAseq analysis and RNAscope analysis of the Dorsal Horn project.

dolomite_p-pump

Python control for the Dolomite Mitos P-pump, a pump used for microfluidic applications.

fetal_brain_multiomics

Supplementary files and notebooks to recreate figures.

fishscale

Spatial analysis of FISH data

flamemaps

Demo page for flame maps

glioblastoma_spatial

Repository for Glioblastoma EEL-FISH data and code

hgaprec

Algorithms for Bayesian Poisson factorization

ipynb-lamanno2016

Notebook and examples related to La Manno and Gyllborg et al. 2016

karolinska_mlengine

linear-regressions-mixture

Python implementation of mixtures of linear regressions.