meta:class_uri and skos:mappingRelation IRIs incorrect in rdf-gen about linkml HOT 8 CLOSED

probably the same issue or close to biolink/biolinkml#163

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I tested out PR biolink/biolinkml#180 with the latest biolink-model with no luck (but not certain I've done everything correctly)

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Which is the desired behavior - http://purl.obolibrary.org/obo/SO_0000704 or https://w3id.org/biolink/vocab/Gene?

Similarly, what are the proper IRIs that the mappingRelation should point to?

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I'm unsure what meta:class_uri should point to (probably a @cmungall question), for my purposes it could be either.

For skos:mappingRelation I think these should point to identifiers "real" iri (real as in whatever is configured in our prefix map), in this example http://purl.obolibrary.org/obo/SO_0000704 instead of https://w3id.org/biolink/vocab/SO:0000704

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biolink-model previously over-used class_uri. @deepakunni3 fixed these. Using https://w3id.org/biolink/vocab/Gene is preferable for biolink-model. So it's possible you are seeing intentional behavior.

However if class_uri is specified then we should use it. Do you have a test case?

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For skos:mappingRelation I think these should point to identifiers "real" iri (real as in whatever is configured in our prefix map), in this example http://purl.obolibrary.org/obo/SO_0000704 instead of https://w3id.org/biolink/vocab/SO:0000704

of course, if it does the latter it's a bug

btw are you using rdfgen or owlgen?

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watching #163 as a fix for this issue

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replaced by #163

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