lingdudefeiteng Goto Github PK

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

bioinf-python

Python for Bioinformatics

biostar-tutorials

Code for biostar tutorials - mostly R and Perl

chip-seq-analysis

chip-seq-pipeline

ENCODE Uniform processing pipeline for ChIP-seq

chipseq

coverage

RGASP3 coverage statistics pipeline

cruk-bioinf-sschool

http://bioinformatics-core-shared-training.github.io/cruk-bioinf-sschool

cufflinks

deeplearning-biology

A list of deep learning implementations in biology

deeptools

Tools to process and analyze deep sequencing data.

heatmapgenerator

HeatmapGenerator is a graphical user interface software program written in C++, R, and OpenGL to create customized gene expression heatmaps from RNA-seq and microarray data in medical research. HeatmapGenerator can also be used to make heatmaps in a variety of other non-medical fields.

homer-idr

Applying IDR analysis to Homer peaks.

hosts

:statue_of_liberty:最新可用的google hosts文件。镜像：

hosts-1

镜像：https://coding.net/u/scaffrey/p/hosts/git

icudt55l

icudt55l.zip

in-depth-ngs-data-analysis-course

Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.

intro-to-shell

Introduction to the Unix shell

krumlovtrinityworkshopjan2016

Trinity & Trinotate workshop materials for Krumlov, Czech Republic Jan 2016

labs

Scripts for HarvardX courses: PH525x

langouetastrie-scidata2016-chicken-rnaseq-retina-code

metaseq

Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data

mmseq

Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads

ngs

Source for building the bschiffthaler/ngs docker

ngs-pipeline

By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline

ngsplot

Quick mining and visualization of NGS data by integrating genomic databases

notes-python

中文 Python 笔记

oneliners

Useful bash one-liners for bioinformatics.

peakzilla

Peakzilla is a new algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you try it and provide me with feedback, so I can improve peakzilla and make you a happier user. Please feel free to send an e-mail to: [email protected]