lijingjing1 Goto Github PK

canu

A single molecule sequence assembler for genomes large and small.

cellranger

10x Genomics Single Cell 3' Gene Expression and VDJ Assembly

daligner

Find all significant local alignments between reads

falcon

FALCON: experimental PacBio diploid assembler

falcon_unzip

Making diploid assembly becomes common practice for genomic study

genomicconsensus

PacBio® variant and consensus caller

git

Git teset

hicplotter

“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau

lachesis

The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)

legionella_pneumophila_genomics

This repository contains bioinformatics scripts and a Docker container to perform the in silico prediction of Legionella pneumophila serogroup from short read sequences using a supervised machine learning approach.

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

nanosv

SV caller for nanopore data

ngs-primerplex

NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design

primalscheme

shasta

De novo assembly from Oxford Nanopore reads.

survivor

Toolset for SV simulation, comparison and filtering

wtdbg2

Important update of wtdbg