liangma2017 Goto Github PK

adipose_sqtls

atac-seq_quality_control_pipe

Atac-seq QC matrix

atac_dnase_pipelines

ATAC-seq and DNase-seq processing pipeline

cas9fatemapping

Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system

chipseq_pipeline

AQUAS TF and histone ChIP-seq pipeline

cos_public_release

Public release of code for analysis of RNA-Seq data from COS cohort

dddnoncoding2017

Code for paper published in March, 2017 analysing the role of de novo mutations in severe developmental disorders (part of the deciphering developmental disorders project).

dmso

genome-wide-changes-in-lncrna-alternative-splicing-and-cortical-patterning-in-autism

Human Postmortem ASD RNA-seq Analysis Parikshak et al 2016

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

gtex-pipeline

GTEx Consortium data production and analysis pipelines

loftee

macs

MACS -- Model-based Analysis of ChIP-Seq

peer

A factor analysis package

pipelines_for_chip-seq_analysis

Pipelines for ChIP-seq analysis, such as peak calling, differential enrichment detection, and pausing index calculation for PolII.

python_for_data_science

A rapid on-ramp primer for programmers who want to learn Python for doing data science research and development.

ricopili

Main ricopili repo for public releases

speaqeasy

SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.

styles

Official repository for Citation Style Language (CSL) citation styles.

tabula-muris

Code and annotations for the Tabula Muris single-cell transcriptomic dataset.

test1