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Fangfang Xia's Projects

assembly icon assembly

Services to assemble genomes and metagenomes with user's choice of assembly algorithm. Currently supports single microbial genome assembly using velvet and/or kiki. More to come...

bhive icon bhive

BHIVE Modular Agent-based Simulation Platform from Microbial Communities

biosal icon biosal

biosal is a distributed BIOlogical Sequence Analysis Library.

cray-parallel icon cray-parallel

A simple tool for formulating and submitting batch jobs on Cray XE6 machines

homology_service icon homology_service

Callable service that provides access to a homolog database that covers prokaryotes, eukaryotes and metagenomes. It can be used for navigation between sequences as well as for computation on protein families defined on the homologs.

kbasefbamodeling icon kbasefbamodeling

Flux balance modeling service. Deploys both the client and service codes.

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