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awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-datascience

:memo: An awesome Data Science repository to learn and apply for real world problems.

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

bamkit

A tool to process bam/sam files

bioc-refcard

Bioconductor cheat sheet

chromosomemappings

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

conda-env

A repository of the conda environments I use the most

cookiecutter_r

dockerfiles

gclib

GCLib - Genomic C(++) library of reusable code for bioinformatics projects

guessmylt

An efficient way to guess the library type of your RNA-Seq data.

igv-snapshot-automator

Script to automatically create and run IGV snapshot batchscripts

makeucsctrackhub

Small utility to build a UCSC trackhub to visualise your data in the genome browser

mooc-single-cell-2023

mouse-progenitors-reanalysis

piscine_42

Ma piscine a @42Born2Code

quick-portfolio

Use this template if you need a quick developer / data science portfolio! Based on a Minimal Jekyll theme for GitHub Pages.

r4ds

R for data science

reproducible-research

A Reproducible Data Analysis Workflow with R Markdown, Git, Make, and Docker

rseqc

fork of RSeQC python RNAseq metrics suit of tools

scallopadvising

scannotationt

scannotationt-paper

Improved annotation with scRNA-seq and long reads

specifications

GFF and GVF specification documents

template-python

A template for new Python libraries.

tips_and_tricks

The tips I need to remember and always forget about R, bash, awk, and other beauties