legumeinfo Goto Github PK

aeschynomenemine

AeschynomeneMine

ahrd-not-hard

a bit of wrapper for running the AHRD analysis in "standalone" mode (ie not via the web interface)

arachis_bioproj

Module to list the Arachis related BioProjects at NCBI

arachis_recent_pubs

Recents publications on Arachis/peanut from Pubmed (like lis_legumes_recent_pubs)

arachismine

A mine containing Arachis duranensis, Arachis ipaensis, and Arachis hypogaea.

arachispheno

AraPheno source code for http://arapheno.1001genomes.org

azulejo

Tiling phylogenetic space with subtrees

bionorm

Normalize and check genomic data against Data Store standards

bluegenes

A friendly next-generation interface for Genomic data discovery powered by InterMine

brilliant_gallery

Fork of Drupal Brilliant Gallery module

cajanusmine

intermine instance for data from Cajanus genus

chado

the GMOD database schema

chado_germplasm_loaders

chado_metadata_loaders

Scripts to load metadata into Chado

chickpeamine

A mine containing chickpea (desi) and chickpea (kabuli) genomes.

cicermine

The new Cicer mine including wild type species

click_loguru

Simple loguru logging to file and stderr for your click application

cmap

A browser-based tool for the visual comparison of various maps (sequence, genetic, etc.) from any number of species.

cmap-js

Display and compare biological maps (genetic, physical, cytogenetic, genomic, linkage groups, chromosomes, scaffolds).

conekt

CoNekT (short for Co-expression Network Toolkit) is a platform to browse co-expression data and enable cross-species comparisons.

conektlegumes

Integrate CoNekT (Coexpression Network Toolkit) with legumes expression data into LIS.

cvitjs

CViTjs - Chromosome Viewing Tool. A javascript tool for quick whole-genome views of data.

datastore-issues

mostly for issues pertaining to the content of the legumeinfo datastore; may also relate to characteristics of its user interface or managing the mirroring process to the legfed instance

datastore-metadata

All the LIS Datastore YAML files under one roof.

datastore-registry

Registry of unique KEY4 keys and their associated Genus-species-collection information

datastore-specifications

Specifications for directory naming, file naming, file contents in the LIS datastore

domain_search

Protein domain search

dscensor

Process LIS Datastore and Provide Web Facing RESTFUL API

funnotate

Functional annotation of FASTA sequences

gcv

Federating genomes with love (and synteny derived from functional annotations)