Comments (2)
Hi, I solved these issues with the following versions:
conda install python==3.8
conda install -c conda-forge numpy==1.22.4
conda install -c conda-forge pandas==1.5.2
conda install -c conda-forge/label/cf202003 scikit-learn==0.22.2.post1
#no joblib needed, its in the scikitlearn install
conda install biopython
conda install requests
from plasforest.
Hi,
In my case neither the instructions nor the comment from @vclanclos worked, I run the following:
mamba create -n PlasForest -c bioconda -c conda-forge python=3.6 numpy pandas scikit-learn==0.22.2.post1 requests
conda activate PlasForest
mamba install -c bioconda blast
bash database_downloader.sh
I hope it helps :)
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Related Issues (16)
- error with database_downloader.sh HOT 3
- Cannot import name 'ChainMap"
- do you know what is the problem when downloading the database HOT 4
- hi, it seems like you updat something, another error like below HOT 6
- AttributeError: module 'numpy' has no attribute 'float'. HOT 1
- cannot find the path to the .sav file HOT 1
- run test plasforest error
- install and database download conda
- blastn HOT 3
- Test fails syntax error HOT 3
- FileNotFoundError: [Errno 2] No such file or directory: 'plasforest.sav' HOT 3
- release candidate HOT 2
- Infinite loop in database_downloader.sh HOT 4
- command line option for plasforest.sav and plasmid_refseq.fasta HOT 1
- database HOT 1
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