lasseignelab Goto Github PK

230227_ej_mousebrainisodiv

This repository is the current repository for our Jones et al. 2024 manuscript titled Long-read RNA sequencing identifies region- and sex-specific C57BL/6J mouse brain mRNA isoform expression and usage.

230227_jw_setbp1manuscript

Framework for investigation of cell-type-specific regulation and expression in rare disease

230313_ts_cccinhumanad

This repo accompanies the Soelter et al., 2024 manuscript "Altered Glia-Neuron Communication in Alzheimer’s Disease Affects WNT, p53, and NFkB Signaling Determined by snRNA-seq"

230321_jlf_sex_bias_adverse_events

Sex-bias adverse event project

230323_jw_diseasenetworks

230418_ts_agingccc

230926_ej_setbp1_alternativesplicing

This repository is for our 2024 manuscript, Cell-type-specific alternative splicing in the cerebral cortex of a Schinzel-Giedion Syndrome patient variant mouse model

cancer_signature_reversion

cinmetrics

CINmetrics R package

cinmetrics_cancer_analysis

Comparing chromosomal instability metrics from the

codereviewutils

Functions used to compare outputs during code review in the Lasseigne lab

cosia

Cross Species Investigation and Analysis : an R package that provides an alternative framework for cross-species transcriptomic comparison of non-diseased wild-type RNA sequencing gene expression data across tissues and species through visualization of variability, diversity, and specificity metrics.

cosia_shiny_app

A ShinyApp for CoSIA

cosiadata

ExperimentHub package for CoSIA

gbm_collab

GBM collaboration analysis with Sam and Anita

gtex_tf_activity

This repository contains all of the code for the GTEx TF Activity Shiny Application

labwebsite

modelselection

pkd_drugrepurposing

Drug repurposing analyses using gene signature reversion for PKD

rprojecttemplate

seekrx

What the Package Does (One Line, Title Case)

sirolimustargets

tc_yodersc

tfea_lasseigne_lab_brownlee

transfer_learning_r03

For the R03