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analysis_helpers

Pieces of reusable code for data analysis

bridge-analytics-template

Repository for streamlining Bridge Data ETL

bridge_adherence

Code Snippet for accessing Dian Arc Adherence

bridgeclient

cmc

visualisation portal for common mind data. No data is stored in github.

codeforkdd2019

Code for "A permutation approach to assess confounding in machine learning applications for digital health" (KDD'19)

folium

Python Data. Leaflet.js Maps.

geo-analysis

Take sra files downloaded from GEO and convert them to differential expression files

geo-metadata-translator

Converts a GEO metadata file into a hierarchical structure of dictionaries (Python)

githubr

Making it easy to talk to GitHub from R

kras_analysis

KRAS NSCLC work essentially

mpower-sdata

scripts used for preparation of Nature Scientific Data submission and release of mPower data

mtb_scoring

Code for scoring Mobile Toolbox measures

open-source-ios-apps

:iphone: Collaborative List of Open-Source iOS Apps

pcbc_c4_analysis

Analysis of C4 data

public-workflows

A place to collaborate on public SeqWare workflows

sage-analysis-pipeline

sepsis-resilience

This project is done by Jing Tong (Computational Biology Ph.D. student at University of Texas Southwestern Medical Center) during Insight health data science progrom in July 2015. Collaberated with Sage Bionetworks to find the important factors for sepsis resilience.

supportmix

A admixture deconvolution method

synapsebridgehelpers

synapsedaemons

synapsedemo

Toy demos

synapsedocs

synapsegraphdb-neo4j

synapseicgcsampletracker

Sample tracking for ICGC/TCGA

synapsepythonclient

python client for the Synapse. Please visit https://synapse.sagebase.org/ for more information.

synapsetutorials

Small Vignettes of Synapse use

synapsewebclient

The web client of the Synapse REST service core

tcgasurvivalmodeling

vcf-uploader

This tool is intended to be a generic upload script to be used to upload VCF's into GNOS