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lanlab's Projects

campygstyper icon campygstyper

A python script for accurate assignment of ANI genomic species to Campylobacter genomes.

dodge icon dodge

Dynamic Outbreak Detection for Genomic Epidemiology

mgt icon mgt

Multi-level Genome Typing

mgt-local icon mgt-local

Install a local blank version of the MGT database

mgt_reads2alleles icon mgt_reads2alleles

Pipeline for converting raw reads into alleles for submission to the MGT website

salty icon salty

The Staphylococcus aureus Lineage Typer (SaLTy)

shigeifinder icon shigeifinder

Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies

snpfilt icon snpfilt

A package to identify SNPs using reference-free assembly

stecfinder icon stecfinder

Clustering and Serotyping of Shigatoxin producing E. coli (STEC) using genomic cluster specific markers

wais icon wais

Where is Insertion Sequence

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