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adept

ADEPT is the only tool to date that dynamically assesses errors within reads by comparing position-specific and neighboring base quality scores with the distribution for the dataset being analyzed.

assay_validation

This is a web-app and workflow for computationally screening PCR-based assays

deteqt

Diagnostic targeted sequencing adjudication

edge

EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.

edge_workflows

faqcs

Quality Control of Next Generation Sequencing Data

gottcha

Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:

gottcha2-custom-db

Generates custom GOTTCHA2 database from a set of genomes

kbase-gottcha2

GOTTCHA2 KBase app

kbase-metaphlan2

KBase wrapper for MetaPhAn2

kwage

Ultra-fast, Bloom filter-based sequence search

lo-et-al-bioinformatics-ec-19-data

megamerge

MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs)

metamer

Cluster shotgun sequencing samples

nasa_genelab_workflows

nmdc-schema

This repository contains the LinkML specification for the NMDC schema and the artifacts generated by LinkML.

normalcowboy

pangia

pcramp

Software for designing multiplex-compatible, PCR-based enrichment assays

phame

Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to construct a phylogenetic tree. Provides evolutionary analyses (genes under positive selection) using CDS SNPs.

phame-app

piret

Pythonic PiReT

ramifi

Recombinant And Mixed-Infection Finder for SARS-CoV-2

rmoore

Moore genome citation tracker

synthetic_transkingdom_data