Comments (4)
leepc12
commented on July 29, 2024
@adroubsa I need more info for debugging. Please post a full log.
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adroubsa
commented on July 29, 2024
Dear Jin
Kindly find attached the full log file , i have changed the html report file to txt file to be able to upload it .
i checked the number of peaks in rep1-rep2- idr thresholded and its 0 ( no peaks ) could that be the reason .
also some of the finished tasks in the html report has [i] , what does it mean
chipseq.bds.20180403_212245_923.report.txt.gz
Thanks again in advance
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leepc12
commented on July 29, 2024
You have a lot of warnings in that log saying:
WARNING: Query NB501598:443:HWF3JAFXX:1:11111:12701:10770 is marked as paired, but its mate does not occur next to it in your BAM file. Skipping
These warning occurred in the BAM-filtering step. so I think this has something to do with the reason that you don't have any IDR peaks.
Please check your BAM files and also check if they are paired end.
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leepc12
commented on July 29, 2024
closing this due to long inactivity
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