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Name: Kristoffer
Type: User
Name: Kristoffer
Type: User
BESST - scaffolder for genomic assemblies
Scaffolding of genomic assemblies with RNA seq data
Scripts for processing PacBio transcriptome (Iso-Seq) data
Lightweight, super fast C/C++ library for sequence alignment using edit (Levenshtein) distance.
Evaluation pipeline for Gap2Seq written in snakemake
Evaluates the best k-mer choice from programs choosing an optimal k in De Bruijn graphs
Benchmarks a range of different sv callers using snakemake for the workflow
Estimating distance of unknown sequence in genomic assemblies using paired read libraries (e.g. PE, MP)
Generates a genome from a markov model, PE and MP reads, a contig assembly and a mapping of reads to contigs
Misc scripts for information processing of genomes, reads, variants, etc..
Calculates distribution of observed fragment sizes (or insert sizes) in various scenarios for structural variant calling or genome assembly
Derives consensus sequences from a set of long noisy reads by clustering and error correction.
Evaluation scripts for IsoCon + targeted sequencing approach
De novo clustering of long transcript reads into genes
Error correction of ONT transcript reads
De novo construction of isoforms from long-read data
Contains mathematical and statistical functions, distributions, tests.
Updated analysis scripts for new strobemer members mixedstrobes and altstrobes
Finds Non-overlapping Approximate Matches (NAMs) between query and reference sequences using strobemers
Reference-free clustering and consensus forming of long-read amplicon sequencing
Calculates optimal k for a DBG assembler given one or more read libraries
A tool to identify full length cDNA reads
some of my codes on bioinformatics with python
Python Koans - Learn Python through TDD
Python course example at SciLifeLab
Scaffolder for genomic data
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.