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Kristian Davidsen's Projects

biotoolsconnect icon biotoolsconnect

Adaptors for content exchange between bio.tools and community projects.

igphyml icon igphyml

A phylogenetic analysis program designed for B cell receptor sequence data. It implements the HLP17 codon substitution model which is capable of accounting for unusual features of affinity maturation such as context dependent hotspot mutations, nonreversible sequence evolution, and descent from a known germline sequence. Based off of codonPhyML.

iq-tree icon iq-tree

Efficient phylogenomic software by maximum likelihood

mim-trnaseq icon mim-trnaseq

Modification-induced misincorporation tRNA sequencing

rootsolve icon rootsolve

:exclamation: This is a read-only mirror of the CRAN R package repository. rootSolve — Nonlinear Root Finding, Equilibrium and Steady-State Analysis of Ordinary Differential Equations

spurf icon spurf

Substitution Profiles Using Related Families

swipe icon swipe

Smith-Waterman database searches with inter-sequence SIMD parallelisation

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