korflab Goto Github PK

algorithms

assemblathon

Code that was used in the Assemblathon 1 and 2 projects

boggleome

A fun algorithmic challenge

cegma_v2

The final version 2 release of our software to detect core genes in eukaryotic genomes

cegma_v3

CEGMA (Core Eukaryotic Genes Mapping Approach), for building a highly reliable set of gene annotations in the absence of experimental data.

centromere_repeat_paper

Code used to generate data for our analysis of centromeric repeats

datacore2024

diseasy

documenation

Testing various documentation systems

exam

Bioinformatics Exam

gendl

Genomic experiments in Deep Learning

genomikon

Genomic sequence analysis library & apps

grimoire

Biological sequence analysis tools

ime

A new code base for the IME project.

imeter

2022 reboot of IME project

isoforms

korflab.github.io

learning-c

learning-conda

learning-go

learning-snakemake

lyman2020

Custom scripts for Lyman et al (2020)

malign

mermade

Bind-n-Seq processing

monsters

Sources, data, and figures for Zhang & Korf 2022

motifamatic

pelops

Probabilistic Evaluation of Local Oligo Patterns in Sequences

perl_utils

Miscellaneous Perl scripts and modules used by people in the Korf lab

qalpha

Quality Assessment using Alpha Fold DB

rosalind

Solutions to Rosalind problems