Comments (1)
justaddcoffee
commented on June 17, 2024
1
@caufieldjh thanks! you have solved this problem - apparently we just need to use this node_list_node_types_column instead of node_types_column. This must have changed recently in Ensmallen.
To show that you've solved the issue:
g = Graph.from_csv(
directed=False,
node_path='tests/resources/test_graphs/pos_train_nodes.tsv',
edge_path='tests/resources/test_graphs/pos_train_edges.tsv',
verbose=True,
nodes_column='id',
node_list_node_types_column='category',
default_node_type='biolink:NamedThing',
sources_column='subject',
destinations_column='object',
default_edge_type='biolink:related_to'
)
g
[snip]
Node types
The graph has 2 node types, which are [biolink:Protein](https://biolink.github.io/biolink-model/docs/Protein.html) (19354 nodes, 52.08%) and [biolink:Gene](https://biolink.github.io/biolink-model/docs/Gene.html) (17809 nodes, 47.92%).
[snip]
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