Comments (2)
joewandy
commented on July 19, 2024
As discussed on slack, we will create another model called 'Factor'. This will be linked to the Sample model, and use it to store the group, life stage, tissue and mutant in the case of FlyMet. For other dataset, we can store different factors, like timepoints etc.
Alternatively we could store the factors in a JSON dictionary and put them into a column in the sample .. But this is not very relational.
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joewandy
commented on July 19, 2024
The PyMT data can now be successfully loaded through the pipeline. However many views are not working, due to the hardcoding in the codes (related to issue #60). Will work on that next.
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Related Issues (20)
- Make pathway analysis species configurable
- Peak explorer M/F page is broken for FlyMet
- Refactor PiMP-export codes
- Refactor pipeline codes
- Allow the uploading of metabolomics data not coming from PiMP
- The gene explorer page needs to be made more generic.
- Optimise queries
- Support multiple projects
- Dockerise this
- Link metabolites back to genes HOT 1
- Metabolite explorer page slow HOT 1
- Add groupings for side tables HOT 2
- Fix Pathway Explorer page Tissue and Age tabs
- Reactome Pathway diagram HOT 2
- Comprehensive metabolite search
- STDs? HOT 2
- Gene names problems on Metabolite Page HOT 1
- Pathway metabolite list doesn't match diagram.
- Add Pathway descriptions to Pathway pages
- When the page is compressed the menu toggle no longer works HOT 1
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