kmayerb Goto Github PK

10x_utils

Tools for Parsing 10X Standard Outputs

aws-batch-conda-py3

A python 3 environment that can be used for small tasks on AWS Batch

baserebase

bestpractice

cagalog

tools for working with the CAGalog

cdr3art

concise visualization of T cell junctions

clonality

Metrics for Clonality in Python

clumptydumpty

congener-underdevelopment

Reconcile PCB congener data with different co-elution patterns

coop-puzzles

count_regressions

Access R Count Regression Models as Command Line Scripts

cowsay-test

cpp

an idiosyncratic cpp cheatsheet

debug-practicum

Practice Debugging in RStudio

dlfs_code

Code for the book Deep Learning From Scratch, from O'Reilly September 2019

dmixcr

An aws batch ready mixcr container

docker-vdj

AWS Batch Ready Image for VDJtools

dockme

a minimal python package with one dependency to be containerized

durt_bcg_revaccination

Analysis of Flow Cytometry Phenotyping Data and Immuno-sequencing from a cohort of tuberculin skin test (TST)-positive South African adults (n=20) from a Phase I Trial who were revaccinated with BCG.

dvamp

docker container for use with vampire (AWS batch ready)

estimate_radius

example of more intensive TCR radius estimation

fishersapi

A package that for applying a fast implementation of Fisher's exact test to observations in a pandas DataFrame.

flowplyr

Read and manipulate .fcs, .xml files associated with flow cytoplasms events for downstream analysis

gini

Calculate the Gini coefficient of a numpy array.

gluten

hello-nextflow

A Hello World Example For Nextflow At The Hutch

hierdiff

hla3

weight of evidence of HLA allele expression based on bulk TCR beta-chain repertoires

hlaguessr_exp

i4tb_jan_2022

Live Demo of tcrdist3