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absence-aware-clustering

amazon-ebs-autoscale

Don't run out of disk space on your EC2 instance when generating or working with large files. Automatically add EBS volumes to a filesystem mount point in response to disk utilization.

arvados

An open source platform for managing and analyzing biomedical big data

bcbio_validation_workflows

A community menagarie of automated variant validations using bcbio and the Common Workflow Language

cheatsheets

cloneman

Package to parse CNV segments files from various methods, and create objects with clonal information for tumor samples

cnvstrmliner

Parsers and functions for visualization of CNV segments

convertchrnames

quick script to convert the chromosome names between various naming schemes.

cwl-tes

cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.

cwltool

Common Workflow Language reference implementation

docker

docker files and wiki

easyalluvial

create alluvial plots with a single line of code

fastclone_guanlab

funnel

Funnel is a toolkit for distributed task execution via a simple, standard API.

ideafix

method to rank mutations for FFPE artifacts using RF/XGboost models

kraken2

The second version of the Kraken taxonomic sequence classification system

mgp_doublehit

pausepred_offline

This repository provides the scripts for the PausePred tool. The PausePred is designed to predict translational halts using ribosome footprint density information obtained from ribosomal profiling data.

silva-138_classifiers

Classifiers trained on different variable regions of Prokaryotic 16S rRNA genes

spartan

SPecific Accurate rRNA & tRNA ANnotation software