Comments (1)
JunZhao1990
commented on June 9, 2024
Thank you for your interest in ALRA.
If you use the function alra() directly, the input matrix should have cells in rows and genes in columns. The function alraSeurat2() will take a Seurat v2 object directly.
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Related Issues (20)
- Can I use ALRA imputed matrix to perform the `Find Marker Gene` step ? HOT 2
- Tips for larger matrices? HOT 3
- During FindVariableFeatures after ALRA output, count slot is empty?
- Error in asMethod(object)
- GetAssayData(pbmc, slot = "counts") gives 0 x 0 matrix HOT 1
- Run ALRA in Seurat v4.1.0
- Imputation before other QC steps?
- ALRA and Seurat HOT 1
- Need to deal with R 4.2.0 HOT 5
- Final proportion of non-zero values is large. HOT 2
- Running ALRA with multiple samples HOT 10
- Differential expression HOT 5
- ALRAChooseKPlot throws error HOT 1
- Which `selection.method` to use for FindingVariableFeatures on ALRA imputed data HOT 2
- Input and Output HOT 3
- Provided normalized function HOT 4
- Imputing integrated data HOT 1
- Input data structure HOT 1
- big data set and K HOT 2
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