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anleitung

Anleitung zur Benutzung unserer GitHub-Organisation

astheriscpackage

Search for and find thermodynamic advantages for product synthesis using metabolic single-species community models

autopacmen

Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method

characterize_and_rank_mcs

Characterizing and Ranking Computed Metabolic Engineering Strategies, Schneider P and Klamt S (2019), Bioinformatics, 25: 3063-3072

cnahelpers

A bunch of functions that come in handy when working with CNA

cnapy

The Klamt lab is the main developer of CNApy, an integrated environment for metabolic network analysis which you can find here: https://github.com/cnapy-org/CNApy

commmodelpy

Create stoichiometric metabolic network models of single-species or multi-species communities

flb_nb_benchmarks

Functions and data for running the benchmarks

gdp-fucose_optmet2023_paper

Contains all relevant data of the 2023 GDP-Fucose paper.

kinetic-models-of-e.-coli

Kinetic model of E. coli's central metabolism under anaerobic conditions. These models are part of a submitted manuscript of Boecker et al.

mcs_extended

mcs_growth-coupling

Scripts to compute MCS for different growth coupling degrees

memo

Models and scripts for the MEMO paper

models_e.coli_high_atp_demand

Kinetic and stoichiometric model for the simulation of enforced ATPwasting in E.coli

optmsp

straindesign

StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy

tcosa

Thermodynamic Cofactor Swapping Analysis