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academic_repo

Repo of academic scripts in Matlab, TCL, R, Python and more

adeft

Tool for disambiguating acronyms and abbreviations in text for NLP applications

agency-jekyll-theme

Jekyll version of the newest Agency Bootstrap theme, plus new features: Google Analytics, Markdown support, custom pages, and more!

agency-jekyll-theme-starter

Agency Jekyll theme starter template for GitHub Pages

bioagents

Biological reasoning agents

biomappings

Community curated equivalences and related mappings between named biological entities

bioregistry

📮 An integrative registry of biological databases, ontologies, and nomenclatures.

bioversions

🪝 What's the latest version for each database?

c3

:bar_chart: A D3-based reusable chart library

chemicalx

A PyTorch and TorchDrug based deep learning library for drug pair scoring.

covid-19

Scripts and other utilities relevant to the CORD-19 dataset

cprog

cwc_integ_service

deft_app

simple flask app for grounding lists of terms

depmap_analysis

Dependecy Map data analysis using INDRA

drug_similarity

Implement and combine multiple different methods of computing drug similarity.

emmaa

Ecosystem of Machine-maintained Models with Automated Analysis

famplex

Resources for grounding biological entities from text and describing their hierarchical relationships.

fastapi_examples

Assembles multiple FastAPI examples in one place

gilda

Grounding of biomedical named entities with contextual disambiguation

go_networks

INDRA-assembled networks of mechanisms between genes sets corresponding to GO terms

hello-world

The 'Hello World' repo

indra

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

indra_apps

indra_cogex

INDRA Context Graph Extension

indra_curation

A utility build around the HTML assembler to enable easy curation of custom sets of INDRA Statements.

indra_db

A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own content and knowledge access. Our implementation of the database is the back-end to many of our projects, providing a vast and detailed knowledge base derived from many resources.

indrabot

indralab-vue

A package of Vue Components for use in Indralab web services.

indralab.github.io

INDRA projects website