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aakmisc

Miscellany

circumstance

a helper package for pomp

clim-dis

Materials for ICTP Workshop on Mathematical Models of Climate Variability, Environmental Change and Infectious Diseases

covid-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

covid-19-data

An ongoing repository of data on coronavirus cases and deaths in the U.S.

genpomp

POMP models for genetic data

gravity

Supporting material for Bjørnstad, Viboud, Grenfell, King (2020) "Comparison of alternative models of human movement and the spread of disease"

kingaa.github.io

Aaron A. King

layouts.jabref.org

Collection of .layout files

malaria-rbc-dynamics

Supporting code and data for Frontiers MS "Red blood cell dynamics during malaria infection violate the assumptions of mathematical models of infection dynamics"

massachusetts-honeymoon

Supporting material for the paper "The impact of past vaccination coverage and immunity on pertussis resurgence", M. Domenech de Cellès, F. M. G. Magpantay, A. A. King, and P. Rohani, Science Translational Medicine 10(434): eaaj1748, 2018. https://doi.org/10.1126/scitranslmed.aaj1748

mathematica-addons

Some useful Mathematica add-on packages

measles_competing_risks

Modelling measles spatial spread with a competing-risks framework

mpifarm

An R package for parallel computation using MPI

ouch

Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses

panelpomp

R package for statistical inference using panelPOMPs (panel Partially Observed Markov Processes)

phylopomp

R package for phylodynamics

pomp

R package for statistical inference using partially observed Markov processes

pomp-practice

r_tutorial

A Tutorial Introduction to R

sbied

Simulation-based Inference for Epidemiological Dynamics

serrapilheira

Training Program in Quantitative Ecology

short-course

Model-based Inference in Ecology and Epidemiology

subplex

Subplex Optimization Algorithm

tao

the Great Tao Package

thid

Theory of Infectious Disease Seminar

vissched

Visit-day Scheduler