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Kimberly D's Projects

ar-nepc-signature icon ar-nepc-signature

This github contains and application to evaluate Androgen Receptor and Neuroendocrine Prostate Cancer Signatures in RNA-Seq data

autoviz icon autoviz

Automatically Visualize any dataset, any size with a single line of code. Created by Ram Seshadri. Collaborators Welcome. Permission Granted upon Request.

cirpy icon cirpy

Python wrapper for the NCI Chemical Identifier Resolver (CIR)

cloome icon cloome

CLOOME: contrastive learning unlocks bioimaging databases for queries with chemical structures

covid-19_knime_jupyter_tableau icon covid-19_knime_jupyter_tableau

Make projections for covid 19 for the next 30 days by combining KNIME for data integration, jupyter to fit models and Tableau to create visualizations.

decimer-python icon decimer-python

Deep Learning for Chemical Image Recognition (DECIMER) - Python scripts

deepchembbb icon deepchembbb

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

deepdelta icon deepdelta

DeepDelta is a pairwise deep learning approach that processes two molecules simultaneously and learns to predict property differences between two molecules.

drfp icon drfp

An NLP-inspired chemical reaction fingerprint based on basic set arithmetic.

drugtax icon drugtax

Categorize small ligands according to chemical properties. Derive simple and explainable features. Only requires SMILEs as inputs.

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