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anthropic-cookbook

A collection of notebooks/recipes showcasing some fun and effective ways of using Claude.

bbmle

maximum likelihood estimation package

brms

brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan

cheatsheets

RStudio Cheat Sheets

cholera_outbreaks_ssa

Cholera outbreaks in sub-Saharan Africa during 2010-2019: A Descriptive Analysis

cholera_typhoid_vimc_ivi

cholera_wash_meta

choleraoutbreakmodel

covid-19_northkorea

covid-19_shincheonji

covid19model

Code for modelling estimated deaths and cases for COVID19.

covidcast

R and Python packages supporting Delphi's COVIDcast effort.

differential-equations

Differential equation solvers

dotfiles

Let's be honest: mostly Emacs.

drake

An R-focused pipeline toolkit for reproducibility and high-performance computing

efficientr

Efficient R programming: a book

ending_cholera

Transmission model for Ending Cholera: A global roadmap to 2030

epiprocess

Tools for basic signal processing in epidemiology

exactextractr

R package for fast and accurate raster zonal statistics

gam.jl

Fit, evaluate, and visualise generalised additive models (GAMs) in native Julia

ggthemes

Additional themes, scales, and geoms for ggplot2

homepage

hugo-xmin

eXtremely Minimal Hugo theme: about 150 lines of code in total, including HTML and CSS (with no dependencies)

ints_mapping

italycoviddeath

Analysis of excess mortality in Italy during the COVID-19 pandemic

jhu_covid-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

ki2022-tutorial-universal-differential-equations

Universal Differential Equations in Julia - 3h Tutorial for KI2022

kmisc

Miscellaneous functions

koshis

lecture_koshis_2022_infect_dis_modeling