kieranrcampbell Goto Github PK

apollo-11

Original Apollo 11 Guidance Computer (AGC) source code for the command and lunar modules.

autosmk

Autogenerate templates for Snakemake rules and R scripts

awesome-single-cell

List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

basilisk

Python for Bioconductor

blog

blog-notebooks

IPython notebooks and R markdowns for blog

bmfa

Modelling bifurcations in genomics data using Bayesian hierarchical mixture of factor analysers

camlab-website

Hugo website for camlab Toronto

cellassign

Automated, probabilistic assignment of cell types in scRNA-seq data

clonealign

Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data

clonealign-guide

clonealign-pipeline

A pipeline to process scRNA-seq (10X chromium) and scDNA-seq CNV data and infer clone-specific expression using clonealign

clonealign-snv-analysis

cloneutils

clvm

Variational inference for covariate latent variable models

conferences

curver

Curve reconstruction from noisy points

curver-python

Curve reconstruction from noisy points (python)

edward-weibull

embeddr

This repository is retired software

embeddr-manuscript

Scripts & figures for embeddr manuscript

gpseudotime

Bayesian Gaussian Process Latent Variable Models for pseudotime inference in single-cell RNA-seq data

kieranrcampbell.github.io

latex-paper-template

Latex template for writing papers

mallard

Data Acquisition for the CRIS experiment at ISOLDE

mfa

Probabilistic inference of single-cell bifurcations

mfa-paper

MFA paper

modelselectionworkshop

Methods & data for DTC model selection tutorial

old-cellassign

Probabilistic assignment of single-cell RNA-seq to known types

oldkieranrcampbellgithubio

Research blog