kianho Goto Github PK

2015-04-08-swc-unimelb-biosciences

annoy

Approximate Nearest Neighbors in C++/Python optimized for memory usage and loading/saving to disk

betasearch

fast indexing and querying of protein beta-sheet substructures.

biopy

Bio-file and bio-sequence utility methods

biopython

Official git repository for Biopython (converted from CVS)

bioutils

bxrec

cheat

cheat allows you to create and view interactive cheatsheets on the command-line. It was designed to help remind *nix system administrators of options for commands that they use frequently, but not frequently enough to remember.

combine-rsgau

cookiecutter

A command-line utility that creates projects from cookiecutters (project templates). E.g. Python package projects, jQuery plugin projects.

cookiecutter-pypackage

Cookiecutter template for a Python package. See https://github.com/audreyr/cookiecutter.

datacarpentry

Data Carpentry workshop materials

deepdist

Lightning-Fast Deep Learning on Spark

eccb12-highlights-slides

jekyll-now

Build a Jekyll blog in minutes, without touching the command line.

kianho.github.io

kubeflow-pipelines-sagemaker-examples

Examples for using Amazon SageMaker components in Kubeflow Pipelines

left

Left is a clean, whitespace-happy layout for Jekyll.

lightfm

A Python implementation of LightFM, a hybrid recommendation algorithm.

luigi

Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.

md_workflow

Molecular dynamics workflow directory structure

md_workflow_py

Molecular dynamics workflow framework in python.

mlmax

Example templates for the delivery of custom ML solutions to production so you can get started quickly without having to make too many design choices.

mpl_preamble

A set of simple matplotlib customisations.

neural_prophet

NeuralProphet - A simple forecasting model based on Neural Networks in PyTorch

nltk

NLTK Source

notebooks

A collection of ipython/jupyter notebooks

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

pconpy

a python module for generating protein contact maps and distance maps

petl

Python Extract Transform and Load Tables of Data