Giter Club home page Giter Club logo

Comments (3)

drunkprogrammer avatar drunkprogrammer commented on July 17, 2024

Besides, it lacks the used drugbank dataset, could you upload this dataset or give a download link?

from caster.

kexinhuang12345 avatar kexinhuang12345 commented on July 17, 2024

here is the dataset: https://drive.google.com/file/d/1drgMxl3BakcSpUQuyN-KmUdxiUuWFeJ7/view?usp=sharing

from caster.

drunkprogrammer avatar drunkprogrammer commented on July 17, 2024

Thanks! Besides, I want to compare the baseline fairly, so I would ask for some details.

  1. Whether this Drugbank dataset splits like the BIOSNAP (train 7: valid 1: test 2).

  2. And whether the shuffled seed is 1 in this Drugbank dataset
    in your code "dde_torch.py" for BIOSNAP:
    torch.manual_seed(1) # reproducible np.random.seed(1)

So maybe I can write the following code to split the dataset?

from random import Random
Random(1).shuffle(drugbank)
train_size = int(0.7 * len(drugbank))
valid_size = int(0.1 * len(drugbank))
train = drugbank[: train_size]
valid = drugbank[train_size: train_size + valid_size]
test = drugbank[train_size + valid_size:]

from caster.

Related Issues (12)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.