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2gc-pipeline

This is the CWL version of the 2GC pipeline.

apiprimed

arcticfreeze

Enjoy Python on the rocks with deeply (recursively) frozen data structures.

asignal

Generator of Accessibility Signal based on ATAC-seq Data

assembly_worflow_docker

Docker images for a cwl based assembly workflow

bioinfo_docker_collection

A repository with recipies for packaging bioinformatics tools into docker images that are hosted on docker hub.

bismark_twgbs_multilib

A Bismark-based CWL workflow for processing TWGBS data that has been prepared using multiple libraries and multiple lanes.

c2wl-rocket

A customizable execution engine for the Common Workflow Language (CWL) with highly flexible task-level execution, especially useful for cloud applications.

cwlab

An open-source framework for simplified deployment of the Common Workflow Language using a graphical web interface

cwlab_demo

drs3

ghga-service-chassis-lib

A library that contains the basic chassis functionality used in services of GHGA

gitribute

A tool to apply changes across repositories.

internal-file-registry-service

This service acts as a registry for the internal location and representation of files.

keyboard-remap

knausj_talon

Config for talon for Mac, Windows and Linux. Very much in progress.

linkml-runtime

Runtime support for linkml generated models

openwio

Open Workflow Input/Output specification

protocol_as_datastructures

Explore how Protocols and Ports could be modeled as data structures.

pyramid-realworld-example-app

Pyramid and OpenAPI3 based RealWorld implementation.

python-template

A general purpose template for python packages and applications.

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

siamcat_docker

files for building docker containers which are useful for siamcat

test_ts

testcontainers-python

typescript

TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

zenodo_test