kelshmo Goto Github PK

2019-05-30-carpentriesworkshop

2020-03-13-sdsu

SWC (R for Reproducible Scientific Analysis) @ San Diego State University

ampad-diffexp

Code base for performing covariate adjustments and differential expression analysis of the RNAseq data from AMP-AD.

analysis

study-specific scripts

biothings_schema.py

Python Package to view and analyze schemas defined in schema.org way

brain_reg_net

Gene regulatory network from mRNA data of brain

covarr

Covariate processing infrastructure

dccmonitor

Allows for monitoring of data uploaded via the dccvalidator application. Functions for getting information on the uploaded files, metadata validation status, and more.

dccvalidator

Validate data, metadata, and annotations

dream_analysis

Simulation and data analysis code for dream paper

dummydocker

filetotable

fvtotable

Push Synapse fileview to a Synapse table with additional notation

json-validation-schemas

JSON validation schemas

knit2synapse

Functionality to knit RMarkdown documents to Synapse wiki pages.

nature-functional-data

Processing code for Nature scientific data paper

portals

React component based configurations that generate community portals built on top of Synapse

portalsdocs

r-ecology-lesson

:notebook: Data Carpentry R lessons on ecology.

sandbox-infra

Automation for the Sage AWS org-sagebase-sandbox account

sc-covarr

scicomp-infra

scicomp-provisioner

An service to auto provision resources on AWS scicomp

synapse-client-cwl-tools

CWL interface to the Synapse command line.

synapse-repository-services

The Synapse Repository Services project is the home of the JSON REST web services for Synapse.

synapse-user-tools

User-facing tools and queries for Synapse.

synapseannotations-1

Sage Bionetworks derived standards for annotating content in Synapse.

synapsedocs

Synapse documentation pages

synapseforms

R Wrappers for Synapse Submission Forms

synapser

An R package providing programmatic access to Synapse