katybrown Goto Github PK

2016-01-01-antarctica

benchmarking_data_cialign

big_data_detectives

bioconda-recipes

Conda recipes for the bioconda channel.

cialign

climatechangecst

climatechangecst_images

clustering

covid_by_region

ervsearch

extendtranscripts

fakesequence

FakeSequence is an artificial non-functional realistic DNA sequence generator.

genomicsfunctions

ilarvirus_sequencing

ji

katybrown.github.io_old

kb_best_practice_coding_researchers

nucleotide_freqs_by_site

Based on a directory of aligned FASTA files, generates a directory of tables providing the number of occurances of each base at each position in the alignment and a single table summarising the nucleotide site diversity for each FASTA file.

pgz-campug

planets

plot_phylo

poverlap

significance testing over interval overlaps

predict.genes.by.exonerate.pipeline

Perl pipeline for prediction of genes based on Guy Slater’s Exonerate. As used in Brown et al. Characterisation of retroviruses in the horse genome and their transcriptional activity via transcriptome sequencing. Virology in press 2012 and Tarlinton et al. Characterisation of a group of endogenous gammaretroviruses in the canine genome. The Veterinary Journal in press 2012

pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

python-intermediate-inflammation

pythoncoursekingsweek1

pythoncoursekingsweek2

pythoncoursekingsweek3

repdata_peerassessment1

Peer Assessment 1 for Reproducible Research

roman_work_experience