katosh Goto Github PK

ai-guideline

Guideline for AI based Medical Devices

dotfiles

my configuration files

drug_design

Drug Design

duplicates

Utilities to find duplicated files and directories in large file systems.

example_data

some small files

femr

FEMR (Framework for Electronic Medical Records) provides tooling for large-scale, self-supervised learning using electronic health records

funnel_trap

The funnel Trap Experiment

gene_expression_deconvolution

Tools to allow the reconstruction of tumor cell specific gene expression patterns from bulk RNA-seq samples

geotag

A small utility to quickly tag studies and samples from the NCBI Gene Expression Omnibus (GEO) with a curses interface.

harmony

Harmony framework for connecting scRNA-seq data from discrete time points

jupyterlab

JupyterLab computational environment.

limstats

statistical analysis for data generated by the database system LIMS

make_movie_list

A python script to create a movie list sorted by IMDB rating, from a movie collection on disk

mdd

medical drug design

mizani

A scales package for python

ms-error

Error Model for Mass Spectrometry

multi_bary_plot

Plot in generalized barycentric coordinates

numerik_ii

http://wikis.fu-berlin.de/display/sarich/Numerics+II

palantir

Single cell trajectory detection

pymc3

Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano

scivis

scripts

running scripts on raspberry pi

seqgl

SeqGL is a group lasso based algorithm to extract TF sequence signals from ChIP, DNase and ATAC-seq profiles

singlecellopenproblems

Formalizing and benchmarking open problems in single-cell genomics

sym

Finding symmetries in 3d geometries for blender

uap

Universal Analysis Pipeline - A python tool for controlled and coordinated data analysis

wiki2beamer

my public developer repo of wiki2beamer