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atac-seq-pipeline

ENCODE ATAC-seq pipeline

bibigrid

BiBiGrid is a tool for an easy cluster setup inside a cloud environment.

bibigrid-images

bioconda-recipes

Conda recipes for the bioconda channel.

bis-tools

A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clustering: alignWigToBed; )

bs_call

DNA methylation and variant Caller for Bisulfite Sequencing Data.

complexheatmap

Make Complex Heatmaps

conda

OS-agnostic, system-level binary package manager and ecosystem

gem3-mapper

GEM-Mapper v3

gembs

gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (WGBS).

gnomepeaks

Peak calling in whole-ganome NOMe data

grape-nf

An automated RNA-seq pipeline using Nextflow

ihec_processing

medecom

Decomposition of heterogeneous DNA methylomes

methylkit

R package for DNA methylation analysis

moabs

A comprehensive, accurate and efficient solution for analysis of large scale base-resolution DNA methylation data

multi-package-containers

Testing building mulled containers for multi-requirement tools.

openjdk-feedstock

A conda-smithy repository for openjdk.

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

wgbs-pipeline

An infrastructure to run gemBS pipeline https://github.com/heathsc/gemBS