Kimberly Meechan's Projects
Advanced Python Course for PreDoc Training at the EBI
Helpers to use BigDataViewer as a quick visualization tool in other projects.
brainglobe.info website
Blender addon for matching 2D images and 3D models
Image Processing with Python
Conversion between spatial transformations of various formats / parametrizations
ImageJ+ImageJ2 compatibility layer
Linking napari layers with Matplotlib plots
A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.
python tools for BigDataViewer
Plotting and Programming in Python
Synthetic EMAP star schema
Versatile acquisition software for serial block-face electron microscopy
representation of multi-angle, multi-channel (etc.) SPIM images and their registration