Comments (6)
I cannot run the debugger but do you have traindata in place ?
from kaggle_ndsb2017.
Thanks.I just place wrong place. Besides why file trained_model.rar cannot download ?
from kaggle_ndsb2017.
Please try again..
It seems to work now.
https://retinopaty.blob.core.windows.net/ndsb3/trained_models.rar
from kaggle_ndsb2017.
I cannot run the debugger but do you have the trained model in place ?
from kaggle_ndsb2017.
In step4_train_submissions , variable 'extension' is assigned at this:
for extension in extensions:
src_dir = settings.NDSB3_NODULE_DETECTION_DIR + "predictions" + str(int(magnification * 10)) + extension + "/"
pred_nodules_df = pandas.read_csv(src_dir + patient_id + ".csv")
pred_nodules_df = pred_nodules_df[pred_nodules_df["diameter_mm"] > 0]
pred_nodules_df = pred_nodules_df[pred_nodules_df["nodule_chance"] > nodule_th]
pred_df_list.append(pred_nodules_df)
Traceback (most recent call last):
File "D:/Python/code/Kaggle/Bowl2017/step4_train_submissions.py", line 397, in
combine_nodule_predictions(None, train_set=False, nodule_th=0.7, extensions=[model_variant])
File "D:/Python/code/Kaggle/Bowl2017/step4_train_submissions.py", line 130, in combine_nodule_predictions
target_path = settings.BASE_DIR + "xgboost_trainsets/" "train" + extension + ".csv" if train_set else settings.BASE_DIR + "xgboost_trainsets/" + "submission" + extension + ".csv"
UnboundLocalError: local variable 'extension' referenced before assignment
from kaggle_ndsb2017.
dicom raw data must have to include stage2 with this code ?
I find you use file combine_nodule_predictions.csv in function 'combine_nodule_predictions'?
from kaggle_ndsb2017.
Related Issues (20)
- settings.MANUAL_ANNOTATIONS_LABELS_DIR and pos_labels_dir = settings.LUNA_NODULE_LABELS_DIR HOT 2
- Accuracy calculation HOT 3
- why do you select "sigmoid" and "None" rather than "Relu" or "LeakyReLU" in last layer of CNN? HOT 3
- Getting confused about where to keep the dataset HOT 10
- Cam we get the CT viewer? HOT 7
- Kaggle dataset not available. Can we skip the ndsb dataset? HOT 3
- Where is NDSB data ? HOT 1
- One question about helpers.py HOT 2
- Testing Data HOT 1
- directory missing HOT 1
- about the step2_train_noudle_detector HOT 1
- Can I get the ensemble model? HOT 1
- Train model takes too many hours, how to optimize it. HOT 1
- test data HOT 1
- some questions about evaluating the canditate nodules of the luna16_nodule_predictions HOT 3
- some questions about the evaluation of the malignancy of the nodules HOT 1
- the transformation of nodule coordinate HOT 2
- Some question about the label preprocess HOT 1
- imformation about malignancy HOT 1
- error with the code
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from kaggle_ndsb2017.