Comments (7)
timholy
commented on May 29, 2024
Because I don't have an OSX machine I can't test this myself, so I'm going to have to plea for help here. @staticfloat?
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staticfloat
commented on May 29, 2024
What does dlopen("libhdf5") show?
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staticfloat
commented on May 29, 2024
You'll have to do using Homebrew first though
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rened
commented on May 29, 2024
here is what i get for dlopen, plus info about the symlinks in the lib dir:
rene@cirdesk3:~ $ julia
_
_ _ _(_)_ | A fresh approach to technical computing
(_) | (_) (_) | Documentation: http://docs.julialang.org
_ _ _| |_ __ _ | Type "help()" to list help topics
| | | | | | |/ _` | |
| | |_| | | | (_| | | Version 0.2.0-rc3+5 (2013-11-07 14:51 UTC)
_/ |\__'_|_|_|\__'_| | Commit 9a691d0* (0 days old master)
|__/ | x86_64-apple-darwin12.5.0
julia> dlopen("libhdf5")
Ptr{Void} @0x000000011887e1c0
julia> Pkg.build("HDF5")
INFO: Building HDF5
======================================================================[ ERROR: HDF5 ]======================================================================
Provider PackageManager failed to satisfy dependency hdf5
at /Users/rene/.julia/HDF5/deps/build.jl:33
===========================================================================================================================================================
=====================================================================[ BUILD ERRORS ]======================================================================
WARNING: HDF5 had build errors.
- packages with build errors remain installed in /Users/rene/.julia
- build a package and all its dependencies with `Pkg.build(pkg)`
- build a single package by running its `deps/build.jl` script
===========================================================================================================================================================
output of ./julia/Homebrew/deps/usr/lib:
lrwxr-xr-x 1 rene staff 41 Nov 7 16:25 libhdf5.8.dylib -> ../Cellar/hdf5/1.8.11/lib/libhdf5.8.dylib
lrwxr-xr-x 1 rene staff 35 Nov 7 16:25 libhdf5.a -> ../Cellar/hdf5/1.8.11/lib/libhdf5.a
lrwxr-xr-x 1 rene staff 39 Nov 7 16:25 libhdf5.dylib -> ../Cellar/hdf5/1.8.11/lib/libhdf5.dylib
lrwxr-xr-x 1 rene staff 42 Nov 7 16:25 libhdf5.settings -> ../Cellar/hdf5/1.8.11/lib/libhdf5.settings
lrwxr-xr-x 1 rene staff 44 Nov 7 16:25 libhdf5_hl.8.dylib -> ../Cellar/hdf5/1.8.11/lib/libhdf5_hl.8.dylib
lrwxr-xr-x 1 rene staff 38 Nov 7 16:25 libhdf5_hl.a -> ../Cellar/hdf5/1.8.11/lib/libhdf5_hl.a
lrwxr-xr-x 1 rene staff 42 Nov 7 16:25 libhdf5_hl.dylib -> ../Cellar/hdf5/1.8.11/lib/libhdf5_hl.dylib
lrwxr-xr-x 1 rene staff 40 Nov 7 16:25 libsz.2.0.0.dylib -> ../Cellar/szip/2.1/lib/libsz.2.0.0.dylib
lrwxr-xr-x 1 rene staff 36 Nov 7 16:25 libsz.2.dylib -> ../Cellar/szip/2.1/lib/libsz.2.dylib
lrwxr-xr-x 1 rene staff 30 Nov 7 16:25 libsz.a -> ../Cellar/szip/2.1/lib/libsz.a
lrwxr-xr-x 1 rene staff 34 Nov 7 16:25 libsz.dylib -> ../Cellar/szip/2.1/lib/libsz.dylib
from hdf5.jl.
staticfloat
commented on May 29, 2024
Silly me. I know the fix for this. I already committed it, but just didn't publish it to METADATA.jl.
@timholy any time you want to bump METADATA, feel free to and the fix will go out so this doesn't happen anymore. Since there are commits other than the one I made, I'll let you be the judge of when a new version can go out.
@blakejohnson @rened, a Pkg.checkout("HDF5") will fix things in the short-term. As soon as METADATA gets bumped, you can Pkg.free("HDF5") to get back onto a released SHA, if you did checkout master via Pkg.checkout(). Otherwise, this will just get fixed whenever you Pkg.update().
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rened
commented on May 29, 2024
Yes, the checked out version works - thanks a lot!
from hdf5.jl.
timholy
commented on May 29, 2024
Done. Thanks to all of you for reporting, fixing, and testing!
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