Steen Hoyer's Projects
Job scripts and R code supporting infectious clone resource announcement paper
The following are scripts and instruction necessary to set up 4 Raspberry Pi Powered Imaging Platforms
Code for Shannon entropy calculations and tanglegram, Dubey et al. 2023 https://doi.org/jhz5
The Donald Danforth Plant Science Center Bioinformatics Core Facility public repository
R and sbatch job scripts for paper on CabLCV mutation
Code supporting papers on deep sequencing of begomovirus populations
Job scripts related to Dye et al. 2023 https://doi.org/kcxk
Use R to look at ICTV.global/msl and /vmr tables, either directly or via a package
ISA tools API
Config files for my GitHub profile.
fiddling with
Fiddling with user pages
Louvain community partitioning of mash distances, hackathon 2023-08-02
Sets of circular virus sequences, converted to a standard orientation
Plant image analysis using OpenCV
PlantCV website repository
PubMode: A fork of Stefan Washietl's PubMed interface for Emacs
Cron tables and helper shell scripts for top-down timelapse imaging of plant rosettes in a two-level controlled-environment growth chamber. See https://doi.org/cmxw
Code supporting Aimone et al. 2022 methods paper (ACMV and EACMCV data), https://doi.org/G8S4
Code supporting Aimone et al. 2022 methods paper (ToMoV data), https://doi.org/G8S4
Shannon entropy calculation for amino acid multiple sequence alignment (Crespo-Bellido et al. and Dubey et al. 2023)
Changelog episode transcripts in Markdown format š
Python tool to reduce size and redundancy of phylogenetic datasets
Work on the variant_pipeline and initial r analysis used in calling variants from NGS data
Job scripts and R code supporting Aimone et al. 2021 https://doi.org/gprm
Yeast 1-hybrid screens for upstream regulators of A. thaliana AGO1, AGO7, and AGO10: raw data and R code
React
Typescript
Django
Laravel
Facebook
Microsoft
Google
Alibaba
D3
Tencent