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jrch507's Projects

3dunetcnn icon 3dunetcnn

Keras 3D U-Net Convolution Neural Network (CNN) designed for medical image segmentation

ae2-nets icon ae2-nets

code of AE^2-Nets (Autoencoder in Autoencoder Networks)

attention-gated-networks icon attention-gated-networks

Use of Attention Gates in a Convolutional Neural Network / Medical Image Classification and Segmentation

batchgenerators icon batchgenerators

A framework for data augmentation for 2D and 3D image classification and segmentation

brainstorm icon brainstorm

Implementation of "Data augmentation using learned transforms for one-shot medical image segmentation"

dltk icon dltk

Deep Learning Toolkit for Medical Image Analysis

dwv icon dwv

DICOM Web Viewer: open source zero footprint medical image viewer.

fastmri icon fastmri

A large-scale dataset of both raw MRI measurements and clinical MRI images

freesurfer icon freesurfer

Stripped sources of Freesurfer + Debian packaging -- volatile, might be rewritten without notice

keras-gan icon keras-gan

Keras implementations of Generative Adversarial Networks.

medicaldetectiontoolkit icon medicaldetectiontoolkit

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

medicalnet icon medicalnet

Many studies have shown that the performance on deep learning is significantly affected by volume of training data. The MedicalNet project provides a series of 3D-ResNet pre-trained models and relative code.

mitk icon mitk

The Medical Imaging Interaction Toolkit.

niftynet icon niftynet

An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

oct-converter icon oct-converter

Tools for extracting the raw optical coherence tomography (OCT) and fundus data from proprietary file formats.

onnx2keras icon onnx2keras

Convert ONNX model graph to Keras model format.

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