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Name: Sean McKinney
Type: User
Bio: Head of Computational Imaging, Stowers Institute
Name: Sean McKinney
Type: User
Bio: Head of Computational Imaging, Stowers Institute
Fiji processing macros associated with Doddihal et al.
Code associated with the submitted publication of Ayantika Sen Gupta, for 1) Finding pairs of peaks in CenpA, 2) Cropping and aligning them, 3) Analyzing the spatial intensity distribution.
A common analysis pipeline for finding spots and worms from low resolution spinning disk data. This is interactive: with outlier elimination easily screened for by clicking on points in extraneous points in plotly, visualizing the corresponding image in napari, and allowing one to remove that point from further analysis.
Combines an ImageJ friendly version of cellpose (see other repository), napari and plotly to perform per nucleus in situ quantification and colocalization.
Fiji macros associated with processing data from Chen et al., eLife 2020.
Intro to python for data science using Pandas and Jupyter Notebooks
Unets, auto-encoder, classifier for 2D/3D image analysis
Image processing in Python
Complete suite of ImageJ/Fiji macros written by Sean McKinney for performing various image processing tasks at the Stowers Institute.
Java code for Sean McKinney's ImageJ plugins from the Stowers Institute.
Code for troubleshooting, analyzing and displaying SlideSeq data
Older code for Unets, auto-encoders, convonets in Tensorflow. Includes original code for processing RNA Fish spots and segmenting EM Nucleii.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.