joshuaharris391 Goto Github PK

autogen_playground

playground for autogen and Mistral 7B stuff

bca_calculation

Calculates BCA concentration from Standard Curve, using the Cunliffe Lab protocol.

breast_cancer_python_analysis

ccle_analysis

Basic Visualisation of CCLE data and development of TP53 gene expression classifier

data-engineering-zoomcamp

Free Data Engineering course!

dataset_ccle

Reference dataset for Cancer Cell Line Encyclopedia

dataset_tcga_brca

dataset_tcga_firebrowse

Reference dataset for TCGA data pulled from firebrowse

dataset_tcga_ov

exp_76_fn14_primer_design

EXP_76_Fn14_Primer_Design

finding_tfbs_fn14_promoter

Investigate changes in TFBS in the Fn14 promoter of various breast cancer cell lines. Then further investigate whether TFBS differences compared to the human reference genome are due to mutations.

fn14_role_in_er_bc

Investigating the role of Fn14 in ER+ breast cancer and predicting response to adjuvant tamoxifen monotherapy

imagej_bw_quantification_invasion

Image J macros to quantify invasion by converting purple pixels to black then quantifying the black to white pixel ratio as a measure of invasion.

jupyter_notebook_test

Final assignment for IBM Data Science Certificate - "tools for data science"

lab_protocols

llm_podgen

mnist_tensorflow

For tensor flow practice

nih_reporter

Using NIH RePORTER data as a machine learning playground for Databricks, NLP and collaborative development

osg_eletronic_lab_book_jh

Otago Study Group tutorial for setting up an electronic lab notebook on Github.

scan_b_dataset_cleaned

Pulls SCAN_B dataset from GEO, extracts clinical information, then saves data as an RDa file. GSE96058 for the validation cohort, and GSE81540 for the training cohort.

swc_git_2018