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afp_app

afp_utils

air-tigrs

Orchestration tools for TIGRLab's data management infrastructure

aroma

ICA-AROMA, as a Python package. A work in progress.

asl-preprocessing

aslprep

bias-in-ai_workshop

bids2nda

A conversion tool for creating NDA compatible metadata representation from BIDS datasets.

blog

book

Sources for the DataLad handbook

boutiques_jsons

Our descriptor and invocation jsons for our pipelines.

c-mariner

Connectivity - Multivariate Analyses and Resampling Inference for Neuroimaging in R

camh-rstats

A place for learning about the wonderful world of R

ciftify

The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets

cmarinerapp

the ShinyApp for C-MARINeR

compare_task_tools

dashboard

tigrlab dashboard development

datman

scripts for managing xnat, QC, and data analysis

dcm2bids

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

dicom-archive-tools

a set of tools to deal with DICOMs

dipy

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

dmri-microstructure

dmri_analyses

Slicer Tractography pipeline for TIGRLab.

dmriprep

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

dmriprep-notebooks

dmriprep_bad

preprocessing for dMRI data

documentation

TIGRLab Documentation

eddymotioncorrection

Open-source eddy-current and head-motion correction for dMRI.

excel-to-python

Excel to Python Course Material

fiberfox-wrapper

Docker/Singularity wrapper for MITK Diffusion FiberFox