Name: José Guilherme Almeida
Type: User
Company: Champalimaud Foundation
Bio: Post-doc @ CCIG, Champalimaud. Former PhD fellow @ EMBL-EBI. Deep-learning and data-science.
Twitter: zga_aaa
Location: Lisbon, Portugal
Blog: josegcpa.github.io
José Guilherme Almeida's Projects
Leveraging keypoint detection and description methods for MRI classification.
Code repository for the longitudinal and phylodynamic analysis in "The longitudinal dynamics and natural history of clonal haematopoiesis"
Efficient Wright-Fisher simulations for intra-tumour population genetics
ISO 3166-1 Country + Nationality listing in multiple formats
Implementation of Bug et al.'s feature-aware normalisation model in TF2
Blood cell detection pipeline in peripheral blood smears
A simple library to construct image data models for data testing and validation.
Config files for my GitHub profile.
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git lfs storage for haemorasis json for visualization
Local flask server to label images with a database in sqlite3
Fork of nnUNet, focusing on improving performance of prediction
Utilities to run nnUNet more easily using containers
Red blood cell segmentation and filtering
Ferramenta para análise de sondagens (em português)
Scripts developed for structural biology. Currently more of a side/spare-time project than any other thing.
Code repository for the blood cell atlas (TBCA)
Training, testing and inference implementations of a U-Net with a few add-ons.
My PhD thesis.
PyTorch-based implementation of non-local means with GPU support.
U-Net implementation in Tensorflow2.0
Code repository for project focusing on blood cell detection and diagnostic prediction from peripheral blood slides