Jose Espinosa-Carrasco's Projects
UNDER CONSTRUCTION: nf-core ARTIC field bioinformatics pipeline
ATAC-seq tutorial to be used during Limoges Course (November 2022)
Single page application to browse AWS S3 bucket content
Internal utility modules for the BBCF
Workflows topic group BioHackathon 2020 mini-publication for https://BioHackrXiv.org
Conda recipes for the bioconda channel.
This repository aims to be a template to develop reproducible analyses for BovReg partners involved in bioinformatics
Test data sets to test bovreg rnaseq pipeline
C. elegans dataset Pergola paper analysis
Config files used to define parameters specific to compute environments at different Institutions
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
Simple JS timeline plugin for d3
R package for building customizable CVs from spreadsheets
Tools to process and analyze deep sequencing data.
Dockerfile to create a docker image containing deeptools
Docker file for plotting and more
Personal dotfiles
Nextflow Pipeline for the analysis of Double Progressive Alignment (DPA)
hands-on for NGS/SNParray CNV call trainning
EBI cancer workshop course materials
EOSC pilot project
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/Gviz.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=Gviz.
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
Bio readme
My academic website -> http://joseespinosa.github.io
D. melanogaster dataset Pergola paper analysis