Comments (1)
All of biocode uses Python3 rather than Python2. In the example you gave, instead of running the script directly (which would have invoked python3 due to the shebang line) you typed python followed by the script name, which invokes python2. Instead, run the script directly like this:
./update_selected_column9_values.py -i LMA_1258_IMG.gff3 -u ID_EC_onlycol1258.tab -k 'ID' -a 'ec_num' -o LMA_1258_IMG_EC.gff
Please re-open this if that doesn't fix the issue.
from biocode.
Related Issues (20)
- convert_gff3_to_ncbi_tbl HOT 5
- Syntax error on gff.py HOT 4
- Exclude mRNA features in bacterial TBL exports
- Biocode.gff module error HOT 2
- [convert_genbank_to_gff3.py] key_error: locus_tag HOT 5
- AttributeError: type object 'str' has no attribute 'maketrans' HOT 2
- AttributeError: 'Gene' object has no attribute 'add_CDS' HOT 4
- Insert EC numbers into chado database issue HOT 5
- convert_augustus_to_gff3.py error HOT 6
- Conda based install HOT 2
- convert_gff3_to_ncbi_tbl.py HOT 2
- convert_gff_to_ncbi_tbl.py HOT 3
- Incorrect parent features from convert_tRNAScanSE_to_gff3.pl HOT 2
- Formatting Issue? HOT 2
- biocode error HOT 16
- product info not printout in tbl HOT 2
- fasta/fasta_simple_stats.py fails on any file with only one sequence
- [convert_genbank_to_gff3.py] No Locus_tag present in my genbank file HOT 2
- Python upgrade/conversion? HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from biocode.